Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDISSTEIWDAIRRNSYLLYYQPKVDAKTNKIIGFEGLVRLKTAT-TILAPIDFFDDIVLLNATREMQDFVAETAIKQINQLGGR----FSISINIPAHYVASSTYMTFLHDYVKEHLKYPECLEIEIIERGEITELAIADKNLRKIKDLGVKVSMDDFGKGYSSLAYLRSLPIDIVKTDMSFIALLKTDRKQQIIIRAIVNLCHDLGGKVVTEGVEDMEQVEKLREMKVDYFQGYYFSRPLPMEEIKQKYSIV
4RNJ Chain:A ((41-282))
----------ALELGEFVLHYQPQFTGDGRRLTGAEALLRWQHPRRGLVPPSEFIPVLEEIGLVAQVGDWLLAEACKQLRSWHKAKVRVPKVSVNLSARQFADGQLGERIAAILYETGIPPACLELELTESILMSDVAEAMQILSGLKRLGLAIAVDDFGTGYSSLNYLKQFPIDVLKIDRSFVDGLPHGEQDAQIARAIIAMAHSLNLMVIAEGVESQAQLDFLREHGCDEVQGYLFGRPMPAEQFGMLYA--
General information:
TITO was launched using:
RESULT:
Template:
4RNJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121288 for 1879 contacts (-64.5/contact) +
2D Compatibility (PS) -25303 + (NN) -7801 + (LL) 1116
1D Compatibility (HY) -19600 + (ID) 3800
Total energy: -176676.0 ( -94.03 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_4RNJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RNJ-query.scw
PDB file :
Tito_Scwrl_4RNJ.pdb
: