Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINSRFYEGFEGEAELSFVAGDNKLLIW----NGYFETILDNLLDCNVEREGVLKEYFNHEGWYDDSPWMIEDNSLTIIQ-LKCFDINKINQTSMKDDLEEVVKTIISFLENNRFSKIYIEYE
1X9F Chain:A ((62-137))
-------ESGEFKSHLVRVANGLKLLINLLDDTLVLQSHLGHLADQHIQRKGVTKEYFRGIG---------EAFARVLPQVLSCFNVDAWNR-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1X9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3779 for 305 contacts (-12.4/contact) +
2D Compatibility (PS) -7202 + (NN) -1455 + (LL) 3852
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -13884.0 ( -45.52 by residue)
QMean score : -0.021
(partial model without unconserved sides chains):
PDB file :
Tito_1X9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X9F-query.scw
PDB file :
Tito_Scwrl_1X9F.pdb
: