Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LIMNANLEVNAELVKESYVYLLSRYLVLRQENFDTKEDKIPYNTLKHNSVSPADANFVNP--NFDVVYSEAWIAVDDEHAVVLEVPEI-KNRYYTVQLLDGWGEVVTNINERNFPEHPHGKFAFVKKGTNPSIPSDAIKI-ELPSEKVKVLLRVEQKDDPEGAVKLQKAFKFDAPDNIKIKEPLEIPHFTNAEFLLEEIYSNLEELLATYPDKMPKAAEFQDKARKVAAYIELGDDQKA---EVRNLIVKEALPYFT----NGAKGFGTQKGGWSVTYVA----------------GAFENDILARAIINYGGIWANSIQEALYFIGQKGTDDELLTGDKIYKIHFSADELPAELANAFWSVTLYSVPDYHVIPNELNKFCINNYTGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAGKEFSLNFRLYVPKKEVLEGKVFLPPLEVF |
| 3U07 Chain:A ((25-433)) | --------TNVDLAEDAYIYGYSIDEAYKFFYHTAVENNYPLNEFQ-------------PTINNDTLHLMGWLDVAAE-PVIVSVPDMDEGRYWILHTMDM-GHYTNAAFSSRTRGTKGGQFMFAAQDWQGEVPASVDEVVRVDSNLVKLMGRIMAVNDEDAKVALNYMDQW----NIR----------TLSEYLGK---NGPKPVQRTYPD--PKKSTWLERVNFVLCDGSMGNADKQWLDKYQSIGVEPCKTDFTPEQLKLAK-VGEKKGMEHLVELAPKMTDARTLLGTRDTLGDAPRDIFAEGT--YLGQWGLPPIEASYRKSDFDSIGQKLDGSK----HDYVMRFKAPNVSEFWSVTIYGNDNRLMAKNDLNRHSRGDRT-MKADKDGYYTIYMSANEKGRADDPNFLPVPE-KPFYAIMRFYGADDAIQSGEYQMPEIKV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U07.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 93120 for 2561 contacts (36.4/contact) +
2D Compatibility (PS) -36030 + (NN) -2686 + (LL) 2696
1D Compatibility (HY) 13200 + (ID) 1300
Total energy: 69000.0 ( 26.94 by residue)
QMean score : 0.060
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