Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKAKSKVARIENRYIKDTATMKKTRSRR--RIALFRRLAFMAI---------IFAVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKLARSEYYLSKDGEIIFNIPEENSKQKE |
2O8B Chain:B ((141-253)) | ------KVARVEQ---TETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSLKEKEE------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2O8B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 6036 for 199 contacts (30.3/contact) +
2D Compatibility (PS) -5775 + (NN) 6320 + (LL) 5380
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: 8061.0 ( 40.51 by residue)
QMean score : 0.093
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