Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMERLQEWMEKALEIVEKGVETN
2GSL Chain:A ((8-111))
----KDIRDYSGLELAFLGDAIWELEIRKYYLQFGYNIPT-LNKYVKAKVNAKYQSLIYKKIIND--LDEEFKVIGKRAKN--IKTFPRSCTVMEYKEATALEAIIGAMYL-------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22390 for 713 contacts (-31.4/contact) +
2D Compatibility (PS) -10506 + (NN) -1643 + (LL) 3440
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -42249.0 ( -59.26 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2GSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSL-query.scw
PDB file :
Tito_Scwrl_2GSL.pdb
: