Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEEETEVK-NGKTKTIKRKVFPGYVLVEIVMTD-----DSWYVVRNTPGVTGFVGSAGSGSKPTPLLPEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNMFGRETPVEVDFNQIEKL
1NZ8 Chain:A ((5-119))
----WYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFV---GAGMRPVPLSPDEVRHILEVSGLL-------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1NZ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46695 for 716 contacts (-65.2/contact) +
2D Compatibility (PS) -12207 + (NN) -5284 + (LL) 4180
1D Compatibility (HY) -10800 + (ID) 2700
Total energy: -73506.0 ( -102.66 by residue)
QMean score : 0.684
(partial model without unconserved sides chains):
PDB file :
Tito_1NZ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NZ8-query.scw
PDB file :
Tito_Scwrl_1NZ8.pdb
: