Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEGARILAKIPDDAYVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK
1VH0 Chain:A ((1-157))
LKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAY--
General information:
TITO was launched using:
RESULT:
Template:
1VH0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100155 for 1186 contacts (-84.4/contact) +
2D Compatibility (PS) -17812 + (NN) -14734 + (LL) 108
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -155343.0 ( -130.98 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_1VH0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VH0-query.scw
PDB file :
Tito_Scwrl_1VH0.pdb
: