Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSDGSN----YKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLISKKVYSYETESDKENVETMLKFLKSKDNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQSGKLIFKKVDTKEKVLIKETYKKN |
2IPI Chain:A ((273-328)) | ------------------------------GAWHQSNSAAGTPYASMHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVN------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2IPI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 9216 for 239 contacts (38.6/contact) +
2D Compatibility (PS) -5856 + (NN) -1518 + (LL) 9236
1D Compatibility (HY) -1200 + (ID) 900
Total energy: 8978.0 ( 37.56 by residue)
QMean score : 0.243
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