Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYVITTELPSAEEFVQLRVDAGLSFRAIEASRKALLKSVYFVGLRSKENGKLIGMGRLVGDGIMFIVSD------IAVFPSFQGKGFGKVIMTHIKDYIEANLDKTACVTLLADVPAH-----GLYKQFGFRESAPASIGMIYQVGN
2CNS Chain:A ((42-123))
-------------------------------------------------NLKLTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETR----GVVTLWLEVRASNAAAIALYESLGFNEA-------------
General information:
TITO was launched using:
RESULT:
Template:
2CNS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41125 for 395 contacts (-104.1/contact) +
2D Compatibility (PS) -7516 + (NN) -261 + (LL) 5424
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: -51278.0 ( -129.82 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_2CNS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CNS-query.scw
PDB file :
Tito_Scwrl_2CNS.pdb
: