Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTDKKSENQTEKTETKENKGMTRREMLKLSAVAGTGIAVGATGLGTILNVVDQVDKALTPKEKAETGVPFYASNQAGIITAQQTYCYIASFDIQTESRQILQDLFVKWTKFADLTTSGGVLRDVDNDMLPPNDTGEADG-LGISNFTVTLGYGPTFFEKDGKDRFGVKAKKPKYLEKIPHMAHDSLDEAYSDGDLCIQVCADDQQVAFHGIRNFIRLASGVAVVRWIEEGFLS-----APKNETPRNLFGFKDGTANVDHDSNKGYKDVVW--AEKDEPEWMRNGSYLGYRKIQMLIEIWDRSSLLDQEDTFGRKKASGAPYHKKHEHDKVDPSKLPA------DSHVRLAKDTKQQ-----MHRRAYSYTNGIDKSTGTIDAGLLFICFTQNPAKQFLPMLSIMGKMDKLNEYTVPIGSA-MFACQGGLAPGEIFGEKLL
2Y4D Chain:A ((28-401))------------------------------------------------------------DARNEKQ-PFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLTQGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFD----ERFGLAPQMPKKLQKMTRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHAARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANP----SESSLMLRRGYSYSLGVTNS-GQLDMGLLFVCYQHDLEKGFLTVQKRLNG-EALEEYVKPIGGGYFFALPGVKDANDYFGSALL


General information:
TITO was launched using:
RESULT:

Template: 2Y4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106724 for 2839 contacts (-37.6/contact) +
2D Compatibility (PS) -36763 + (NN) -13583 + (LL) 4460
1D Compatibility (HY) -25200 + (ID) 7250
Total energy: -185060.0 ( -65.18 by residue)
QMean score : ?

(partial model without unconserved sides chains):
PDB file : Tito_2Y4D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y4D-query.scw
PDB file : Tito_Scwrl_2Y4D.pdb: