Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVPEGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEVRSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVFLGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGYF-SIRKNKKWMKNFEFKKVDEEVK |
1V54 Chain:I ((19-51)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFY--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V54.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3395 for 120 contacts (-28.3/contact) +
2D Compatibility (PS) -3265 + (NN) -556 + (LL) 17952
1D Compatibility (HY) 2400 + (ID) 150
Total energy: 12986.0 ( 108.22 by residue)
QMean score : 0.067
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