Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLKNINELAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQDNLHHVTIIDPLGDDVTPKKLKEIQAELRG
2JVD Chain:A ((10-46))
-------INELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMK------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5647 for 170 contacts (33.2/contact) +
2D Compatibility (PS) -4244 + (NN) -4029 + (LL) 2432
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -3994.0 ( -23.49 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_2JVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVD-query.scw
PDB file :
Tito_Scwrl_2JVD.pdb
: