Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKQAILNNIHQTWQEEANAISRLPEVTSEEALVK-TVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACK--TKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
3ETN Chain:A ((19-210))
----GMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTPTTSTTVMTVIGDILVVQTMKRTEFTIEEYSKRHHGGYL-------
General information:
TITO was launched using:
RESULT:
Template:
3ETN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117253 for 1507 contacts (-77.8/contact) +
2D Compatibility (PS) -20142 + (NN) -11419 + (LL) 432
1D Compatibility (HY) -8400 + (ID) 3250
Total energy: -160032.0 ( -106.19 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3ETN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ETN-query.scw
PDB file :
Tito_Scwrl_3ETN.pdb
: