Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKISSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDGEYVYYVHSYYANCPEEYIIATSGYSIEV-PGMINKGNIYGAQFHPEKSGQIGLEILKGFKEVTYSCKSSQQ
1KXJ Chain:A ((46-203))
--------------------------------------DLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEESEEAPGVKGLSLIEGNVVKLRSR---RLPHMGWNEVIFKDTFP------NGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRKGRILGFQFHPEKSSKIGRKLLEKVIECSLSRR----
General information:
TITO was launched using:
RESULT:
Template:
1KXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87833 for 1236 contacts (-71.1/contact) +
2D Compatibility (PS) -17198 + (NN) -6498 + (LL) 3372
1D Compatibility (HY) -16400 + (ID) 3300
Total energy: -127857.0 ( -103.44 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1KXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KXJ-query.scw
PDB file :
Tito_Scwrl_1KXJ.pdb
: