Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTEN------FISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
4HAM Chain:A ((14-115))
-------PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIANQTDKLSS-----PKKLAETRTKLKETILDLVYLGVNIEEI-----------------
General information:
TITO was launched using:
RESULT:
Template:
4HAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32190 for 572 contacts (-56.3/contact) +
2D Compatibility (PS) -10064 + (NN) -1261 + (LL) 2304
1D Compatibility (HY) -11200 + (ID) 2000
Total energy: -54411.0 ( -95.12 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_4HAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HAM-query.scw
PDB file :
Tito_Scwrl_4HAM.pdb
: