Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSKNVKKIVITLFALIMTVGLASGFIAPIKASADTNNFTVKVEYVDADGAEIAPSDILTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKTIDVRYVDETGKDLLPVVEIINSEAAVLETISDYTFVKKDISIDGLHIIFRYKKNISTIPDFGKPNQVTVNYLDENKTPIAPSLYLSGLFNEAYNVP---MKKIKGYTLLKYDSEILGVFTESPQTINIIYQKKAPEQAPSMEPLPDPTVPESPQVEKSKIKKSKIETTEKRTTSKVKIAPKALKLTKVEQKKQETKDSLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRRRKE |
4H0N Chain:A ((88-145)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------YLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFE----NSTVRNLFIDKLKECNFIYQE--------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4H0N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6698 for 253 contacts (-26.5/contact) +
2D Compatibility (PS) -5510 + (NN) 330 + (LL) 18656
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -172.0 ( -0.68 by residue)
QMean score : 0.124
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