Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNNNPDVIIR--SLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
5PNT Chain:A ((8-155))
---VLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHV-ARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIEDPYYGNDSD-FETVYQQCVRCCRAFLEK-
General information:
TITO was launched using:
RESULT:
Template:
5PNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53705 for 1210 contacts (-44.4/contact) +
2D Compatibility (PS) -15846 + (NN) -8633 + (LL) 700
1D Compatibility (HY) -14800 + (ID) 2900
Total energy: -95184.0 ( -78.66 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_5PNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PNT-query.scw
PDB file :
Tito_Scwrl_5PNT.pdb
: