Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIKLTNVVKKFGKIEAVKGINLEVEKGSLFAFLGENGAGKSTTLSMICTESEPTSGEIYIDDEKLTFKNRKLFRQKLGVVFQENVLDDLLTVRENLYNRASLYGKTKAEITERLALVSSIMGIEDILNRRFEKLSGGQKRRAEIARAIMHDPEILLLDEPTTGLDPKTRVSVWKIIDYLREELGMTVFLTTH-YLEEAKDADQLAVIHKGKIIAQGTPTNIRSRFSVDKIFFYDAKVAELQKIMKKANLPFKVSKATMRVDVITQDVEILAILNQAAGLYGSFEVIKGNLDDAFISMIKEESDD
1VCI Chain:A ((13-239))-VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQ------HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR--------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1VCI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104917 for 1689 contacts (-62.1/contact) +
2D Compatibility (PS) -23041 + (NN) -6060 + (LL) 7704
1D Compatibility (HY) -19200 + (ID) 4100
Total energy: -149614.0 ( -88.58 by residue)
QMean score : 0.478

(partial model without unconserved sides chains):
PDB file : Tito_1VCI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VCI-query.scw
PDB file : Tito_Scwrl_1VCI.pdb: