Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIVFFDVDGTLVG-ETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELD---INSYICYNGQYVIFEGKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMNSIKREY-PKVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI
1YMQ Chain:A ((2-261))
-TKALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRNLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGISKAMKHFGII
General information:
TITO was launched using:
RESULT:
Template:
1YMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135661 for 2284 contacts (-59.4/contact) +
2D Compatibility (PS) -27845 + (NN) -14327 + (LL) 208
1D Compatibility (HY) -18800 + (ID) 3950
Total energy: -200375.0 ( -87.73 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_1YMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YMQ-query.scw
PDB file :
Tito_Scwrl_1YMQ.pdb
: