Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRKFPTMWEAVKVSRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
3RYD Chain:A ((15-260))
---QQIDKLICSWLKQIDNVIPQLIME-MTT-TKRHRFDLVTNVDKQIQQQFQQFLATYFPEHQLLAEEKSN-MITNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKAIRGEGAFCNGIKMEE-PPSLKLEDAIISFNAQVMN-LDTVQDLFDASFSYRLVGACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPFIISNKACHETVL-----
General information:
TITO was launched using:
RESULT:
Template:
3RYD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125362 for 2011 contacts (-62.3/contact) +
2D Compatibility (PS) -26697 + (NN) -12762 + (LL) 264
1D Compatibility (HY) -16800 + (ID) 4450
Total energy: -185807.0 ( -92.40 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3RYD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYD-query.scw
PDB file :
Tito_Scwrl_3RYD.pdb
: