Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIKDKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPD---LEVKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYNPRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMQGIDYELVDMTTVVIVGNKETYVKNGKMITPRGYSL
3NUT Chain:A ((11-247))
-VTVAGLGPGREDLVTPEVTAALAEATDIVGYIPYVARIAPR-EGLTLHPTDNRVELDRATHALEMAAEGRRVVVVSSGDPGVFAMASALFEALE-AHPEHAGTEIRILPGITAMLAAAAAAGAPLGHDFCAINLSDNLKPFEILEKRLRHAARGDFAMAFYNPRSKSRPHQFTRVLEILREECEPGRLILFARAVTTPEQAISVVELRDATPEMADMRTVVLVGNAATRRVGPWVYTPR----
General information:
TITO was launched using:
RESULT:
Template:
3NUT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -199161 for 1877 contacts (-106.1/contact) +
2D Compatibility (PS) -26457 + (NN) -16484 + (LL) 544
1D Compatibility (HY) -13200 + (ID) 4600
Total energy: -259358.0 ( -138.18 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3NUT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NUT-query.scw
PDB file :
Tito_Scwrl_3NUT.pdb
: