Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGAGKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTAKENVEL--------AAQIAPNALDAETVLTQVGLSHRLDNF-PAQLSGGEQQRVAIARALAKAPKLLLCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRSIKENPEPMSIDDLEW
1F3O Chain:A ((2-223))
---IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV-----------------
General information:
TITO was launched using:
RESULT:
Template:
1F3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121164 for 1713 contacts (-70.7/contact) +
2D Compatibility (PS) -23304 + (NN) -10248 + (LL) 1208
1D Compatibility (HY) -20000 + (ID) 4950
Total energy: -178458.0 ( -104.18 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1F3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3O-query.scw
PDB file :
Tito_Scwrl_1F3O.pdb
: