Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLGNDWDELLKNEFNQPYYLTLRQFLKKEYQTKKVFPDMYDIFNALKHTAYKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNCEI-PNNGYLIPWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNHIIEIINQKEEPVVFLLWGSNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPIDWQIPSI
3UFM Chain:A ((23-242))
---LPEDWQEALLPEFSAPYFHELTDFLRQERKEYTIYPPAPDVFNALRYTPLGEVKVLILGQDPYHGPNQAHGLSFSVRPGVRVPPSLRNIYKELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPLS-EQYFFGTRPFSKTNEALEKAGRGPVEWQLPA-
General information:
TITO was launched using:
RESULT:
Template:
3UFM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98878 for 1774 contacts (-55.7/contact) +
2D Compatibility (PS) -23368 + (NN) -8908 + (LL) 824
1D Compatibility (HY) -19600 + (ID) 6100
Total energy: -156030.0 ( -87.95 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_3UFM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UFM-query.scw
PDB file :
Tito_Scwrl_3UFM.pdb
: