Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK
3ISV Chain:A ((5-268))
-KQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDATDEE-EHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLG-
General information:
TITO was launched using:
RESULT:
Template:
3ISV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233688 for 2400 contacts (-97.4/contact) +
2D Compatibility (PS) -28308 + (NN) -10154 + (LL) 460
1D Compatibility (HY) -38400 + (ID) 13150
Total energy: -323240.0 ( -134.68 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3ISV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ISV-query.scw
PDB file :
Tito_Scwrl_3ISV.pdb
: