Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTS--FYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
1K7K Chain:A ((3-190))
--KVVLATGNVGKVRELASLLSDFGLDIVAQTDL-GVDSAEETGLTFIENAILKARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKLLETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTAAELTREEKSAISHRGQALKLL--------------
General information:
TITO was launched using:
RESULT:
Template:
1K7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81011 for 1486 contacts (-54.5/contact) +
2D Compatibility (PS) -19788 + (NN) -8735 + (LL) 1528
1D Compatibility (HY) -12000 + (ID) 4350
Total energy: -124356.0 ( -83.69 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_1K7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K7K-query.scw
PDB file :
Tito_Scwrl_1K7K.pdb
: