Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGVALILP--EKAYFVTDFRYTEQAAKQAEGYEIVQHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSEFKQMERVFNRQLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRAGATSSSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLLITETGNEILIHSPKELIIL |
| 1PV9 Chain:A ((8-345)) | ------LVKFMDENSIDRVFIAKPVNVYYFSGTSPLGGGYIIVDGDEATLYVPELEY--EMAKEESKLPVVKFKK--FDEIYEILKNTETLGIEGTLSYSMVENFKEKS-V--KEFKKIDDVIKDLRIIKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREIYEIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENGAKRLTKTER----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155706 for 2862 contacts (-54.4/contact) +
2D Compatibility (PS) -36273 + (NN) -15234 + (LL) 1772
1D Compatibility (HY) -27600 + (ID) 7150
Total energy: -240191.0 ( -83.92 by residue)
QMean score : 0.509
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