Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSKEEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTF-LWFN---LGSPDMVLAIIAGLV-YLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WVF Chain:A ((335-522))
------------------------------------FISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPL----TKAQYTSMAKMRMLQPKIQAMRERLG-----DDKQRISQEMMALYKAEKVNPLG-GCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQ-------------KIMTFMPVI--FTVFFLWF--PSGLVLYYIVSNL-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157904 for 1126 contacts (-140.2/contact) +
2D Compatibility (PS) -18383 + (NN) -6113 + (LL) 7852
1D Compatibility (HY) -28000 + (ID) 3300
Total energy: -205848.0 ( -182.81 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_3WVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WVF-query.scw
PDB file :
Tito_Scwrl_3WVF.pdb
: