Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVDVI-LIQADFDDLASLTEIEKQVFQ----LDAFIHAAGHAHYSLFQDTTDTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
2PH3 Chain:A ((1-241))
----MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGG---
General information:
TITO was launched using:
RESULT:
Template:
2PH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -204819 for 2034 contacts (-100.7/contact) +
2D Compatibility (PS) -25516 + (NN) -5615 + (LL) 808
1D Compatibility (HY) -12400 + (ID) 4150
Total energy: -251692.0 ( -123.74 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2PH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PH3-query.scw
PDB file :
Tito_Scwrl_2PH3.pdb
: