Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKF-------DEAAANNADNAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK
4ADV Chain:T ((2-84))
--NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFN------EMQPIVDRQAAKGLIHKNKAARHKANLTAQINK
General information:
TITO was launched using:
RESULT:
Template:
4ADV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11499 for 417 contacts (27.6/contact) +
2D Compatibility (PS) -8265 + (NN) -3000 + (LL) 660
1D Compatibility (HY) -2400 + (ID) 2050
Total energy: -3556.0 ( -8.53 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4ADV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ADV-query.scw
PDB file :
Tito_Scwrl_4ADV.pdb
: