Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
4MB6 Chain:A ((10-172))
QQLKYIKDSIKTIPDYPKAGILFRDVTSLLENPKAYSASIELLSEHYSESGVTKVVGTEARGFLFGAPVALALGVGFVPVRKPGKLPRETISESYELEYGTDTLEIHTDSIQPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVVHAAFIINLPELGGEARLT----------
General information:
TITO was launched using:
RESULT:
Template:
4MB6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122471 for 1219 contacts (-100.5/contact) +
2D Compatibility (PS) -17186 + (NN) -935 + (LL) 948
1D Compatibility (HY) -15200 + (ID) 4250
Total energy: -159094.0 ( -130.51 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4MB6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MB6-query.scw
PDB file :
Tito_Scwrl_4MB6.pdb
: