Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKKITPKAMCAWIPKREDETHKGDYGRVLIVAGNKQFGGAAIMAAEACVKSGAGLTTVASDSVNRPALQTRIPECMFIDYENITSLSEQISQFDTILIGPGLGLDAYAEEIFRLVLQKSTEHQQVIIDGDGITIYAKGENPH--PAAKLTFTPHAGEWERLKVLA-PDAV-TPTDVALA---IDATIVLKGHRTKVYSGESAWQNMYGTPAMATGGMGDTLAGTICGLMAQ--TEKPITGTLAAVFLHSYIGEILAKKRYVVLPTEIAEELPTYLKIFSETDEHA |
| 3BGK Chain:A ((46-311)) | ------------IKPRPLNSHKGTFGRVLLIGGNYPYGGAIIMAALACVNSGAGLVTVATHKDNITALHSHLPEAMAFDMVEKDRLSEQITAADVVLMGPGLAEDDLAQTTFDVVWQAIEPKQTLIIDGSAINLLAK-RK-AIWPTKQIILTPHQKEWERLSGLTIPEQIEAATQTALAHFPKETILVAKSHQTKIYQGQKIGHIQVGGPYQATGGMGDTLAGMIAGFVAQFHTDR-FEVAAAAVFLHSYIADQLSKEAYVVLPTRISAEITRVMKEMSE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3BGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -145578 for 2253 contacts (-64.6/contact) +
2D Compatibility (PS) -27453 + (NN) -8365 + (LL) 1008
1D Compatibility (HY) -20000 + (ID) 6000
Total energy: -206388.0 ( -91.61 by residue)
QMean score : 0.622
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