Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTLTNKLAEKEHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVSAIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKL--AMSKVQIPLIIMSYINPIFHLGIPKFVELVQKTPVKGLIIPDLPYEHQKLITPELQGTDIALIPLVSLTSPKERLEEIAKQAEGFIYAVTVNGTTGVRSEFDAHIDSHLAYLKSISPVPVLAGFGVSSIEHVEKFAHV-CDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIKN
1TJR Chain:A ((11-245))
--------LMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKE----AGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQG-------------
General information:
TITO was launched using:
RESULT:
Template:
1TJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -198338 for 1966 contacts (-100.9/contact) +
2D Compatibility (PS) -25836 + (NN) -15774 + (LL) 2648
1D Compatibility (HY) -18400 + (ID) 4400
Total energy: -260100.0 ( -132.30 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_1TJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TJR-query.scw
PDB file :
Tito_Scwrl_1TJR.pdb
: