Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPEDLLE-YDGALIGGYTYDDG--QLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTVDLVETRLKEQGATVPVAGLKVDLDPDEEDVVRAESYAKTFVEALKG
1XYV Chain:A ((2-130))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDCIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDP---------------------
General information:
TITO was launched using:
RESULT:
Template:
1XYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76361 for 1070 contacts (-71.4/contact) +
2D Compatibility (PS) -13420 + (NN) -7548 + (LL) 1960
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -103669.0 ( -96.89 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1XYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XYV-query.scw
PDB file :
Tito_Scwrl_1XYV.pdb
: