Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVQLAVNPNTVSRAYQELERAGYIYAKRGMGSFVTSDKALFDQLKIELADAITERFLEEAKSIGLDDQAAIELLIKRSRNHE
4HAM Chain:A ((14-80))
---------PIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFIAN----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4HAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22902 for 439 contacts (-52.2/contact) +
2D Compatibility (PS) -7230 + (NN) -1490 + (LL) 4556
1D Compatibility (HY) -6800 + (ID) 1500
Total energy: -35366.0 ( -80.56 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_4HAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HAM-query.scw
PDB file :
Tito_Scwrl_4HAM.pdb
: