Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
3VZX Chain:A ((8-226))
-KHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE-LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK----
General information:
TITO was launched using:
RESULT:
Template:
3VZX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159006 for 1848 contacts (-86.0/contact) +
2D Compatibility (PS) -23649 + (NN) -8414 + (LL) 500
1D Compatibility (HY) -22800 + (ID) 5000
Total energy: -218369.0 ( -118.17 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_3VZX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VZX-query.scw
PDB file :
Tito_Scwrl_3VZX.pdb
: