Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ISKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLDLVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDEHDFDTKLRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRP-KMDGRSMFLVLAPLHEK
2IFE Chain:A ((95-176))
--------------------------------------------------------------------------------------EIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAP----
General information:
TITO was launched using:
RESULT:
Template:
2IFE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44327 for 576 contacts (-77.0/contact) +
2D Compatibility (PS) -8751 + (NN) -4429 + (LL) 7364
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -59943.0 ( -104.07 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_2IFE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IFE-query.scw
PDB file :
Tito_Scwrl_2IFE.pdb
: