Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLGFPKVRQFIAKSLAEKIKQTFGEIDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEHGKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGKQLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNPEKWGK
3DEZ Chain:A ((35-241))
MTLAKDIARDLLDIKAVYLKPEEPFTW---IKSPIYTDNRITLSYPETRTLIENGFVETIKEAFPEVEVIAGTATAGIPHGAIIADKMNLPLAYIRSKPK-----NQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAIFTYELPKATANFEKASVKLVTLSNYSELIKVAKVQGYIDADGLTLLKKFKENQETW--
General information:
TITO was launched using:
RESULT:
Template:
3DEZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133917 for 1660 contacts (-80.7/contact) +
2D Compatibility (PS) -22104 + (NN) -10514 + (LL) -296
1D Compatibility (HY) -22800 + (ID) 5550
Total energy: -195181.0 ( -117.58 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_3DEZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DEZ-query.scw
PDB file :
Tito_Scwrl_3DEZ.pdb
: