Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P84 Chain:A ((4-180))
--EKAVILDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKPVPVGEIDITLYRDDLSVTSND--EPLVKGTDIPVDITDKKVILVDDVLYTGRTVRAGMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLDEVDQ-NDRVSIYEN-
General information:
TITO was launched using:
RESULT:
Template:
4P84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101314 for 1430 contacts (-70.8/contact) +
2D Compatibility (PS) -19628 + (NN) -7829 + (LL) 728
1D Compatibility (HY) -20800 + (ID) 6200
Total energy: -155043.0 ( -108.42 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_4P84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P84-query.scw
PDB file :
Tito_Scwrl_4P84.pdb
: