Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWKSSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGV--NRIPTFK---PVGINDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVTDPQIVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAGVPYNNSFSNAYGPIVGTK |
4HMC Chain:A ((7-316)) | -----------------------------------------DDNVVVGYWHNW-CDGR-GYQGGNAPCVELKTVNPQYNVVNISFMKVYDIAEGRIPTFKLDPTIALSEAEFIAQIDTLNSQGRSVLIALGGADAHIELTRGDEDALAAEIIRLTDLYGFDGLDIDLEQAAITAKDNQFVIPAALKMVKEHYRKTGDNFMITMAPEFPYLTANGAYTPYLTELDGYYDFINPQFYNQGGDGLWI-EGVGWIAQNNDALKEEFIYYIADSLINGTRNYHKIPHDKLVFGLPSNIDAAATGYIQDPQDLYKAFDRLKAQGQPLRGVMTWSVNWDMGTDAANNSYNQQFIKDYGNFI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HMC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163516 for 2601 contacts (-62.9/contact) +
2D Compatibility (PS) -33036 + (NN) -17372 + (LL) 1972
1D Compatibility (HY) -36800 + (ID) 9100
Total energy: -257852.0 ( -99.14 by residue)
QMean score : 0.601
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