Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIIRNKQELKEVILKQKQANKTIGFVPTMGFLHEGHMTLVSHARKESDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTELSTKLHVDKRVSVLDGADREGHFDGVVTVLTKLFHLVSPDNAYFGQKDAQQVAVVSGLVEDYFFPVNLRIIATVREADGLAKSSRNVYLTEKERKEAPVIHEALQLGRKLIESGETNQAKIVQMMTEKINEQTSHELIAYLAIYSYPEFTPVTDWSKGIIIAAAVKYSKARLIDNELINVKRR
2X3F Chain:A ((6-283))
--LITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVSTNDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDMYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDKVTQYLESHISGR-IEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIG----
General information:
TITO was launched using:
RESULT:
Template:
2X3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154178 for 2299 contacts (-67.1/contact) +
2D Compatibility (PS) -30547 + (NN) -16477 + (LL) 1016
1D Compatibility (HY) -28400 + (ID) 6900
Total energy: -235486.0 ( -102.43 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2X3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X3F-query.scw
PDB file :
Tito_Scwrl_2X3F.pdb
: