Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDLVNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVFQYIFIAACVYAALIGAQALIKEETDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFLASVALVLFLKPSGVDGGNLVMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDKVDFFKYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV |
| 3Q9D Chain:A ((19-35)) | -------------------------------------------------------------------------------------------------------EGNLKRIFATPIGYTTF------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3Q9D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 77 for 56 contacts (1.4/contact) +
2D Compatibility (PS) -1708 + (NN) -483 + (LL) 24700
1D Compatibility (HY) -1600 + (ID) 200
Total energy: 20786.0 ( 371.18 by residue)
QMean score : -0.018
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