Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIYFDHAATTKMSEAALEVFMSASREFFANSESLHDAGTKSAALLEKCRGSFAEILHVPSRGIMFTSGGTESNQIAI--QTLLHSTKKKEVLVSPLEHASVWQQLEALEEAGACWLRLLPVDAFGRVDPAVLSDMISPDTGLVIIQHVNSEIGSIQPIRELAHI-AKQAGVYFHTDIVQSFGKLDLTLDDVTS--FSISSHKIYGPKGAGLLFIKPDVPMQVPLPNVHHEFGFRPGTVNVPAIAAFTTAAYDIMGNREKEARRIAELKKAICEALTAKVKVEGGLNTSPFILGITLPN--------MQGQEALLALNEADIQISTTSACSLRDPAPSRTLLATGKTIEEASRFIRLSFGRENELSDSLIFKKELDKLLRKR |
| 4HVK Chain:A ((2-363)) | -AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG-FEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAA--LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAA-EITAMEWREEAERLRRLRDRIIDNVLKIE-ESYLNGHPE---KRLPNNVNVRFSYIEGESIVLSLDMAGIQASTG--------QPSHVLMACGLKHEEAHGTLLLTLGRYNTDED-------VDRLL--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153078 for 3000 contacts (-51.0/contact) +
2D Compatibility (PS) -37771 + (NN) -23397 + (LL) 2312
1D Compatibility (HY) -19600 + (ID) 5900
Total energy: -237434.0 ( -79.14 by residue)
QMean score : 0.471
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