Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFITAMLISFLVFSFISGEVSAATWLLFIALALFGALGFLDDYIKVVQKRNLGLTSKQKFLGQVVISILFYLVYHFNDFAETLNIPFTNIEVDLGWFFVIFILFWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFKATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF |
3LPD Chain:A ((121-171)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVAGVAYGAKVVPVRALGRSGGYDS--DISDGLYWAAGGRIAGIPENRNPAKV------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -27890 for 237 contacts (-117.7/contact) +
2D Compatibility (PS) -5415 + (NN) -429 + (LL) 24712
1D Compatibility (HY) 0 + (ID) 750
Total energy: -9772.0 ( -41.23 by residue)
QMean score : 0.017
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