Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
4PV6 Chain:C ((61-144))
--------------------------------------------VVGFIVGSKYSRTEARILLFAVDERFRRMGVGSALMDAFLSLCREQNMLSVRLEVRTDNDEAIRFYKKYGFVITAMLPNYYSDS-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45928 for 485 contacts (-94.7/contact) +
2D Compatibility (PS) -9534 + (NN) -7962 + (LL) 5456
1D Compatibility (HY) -9200 + (ID) 900
Total energy: -68068.0 ( -140.35 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_4PV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PV6-query.scw
PDB file :
Tito_Scwrl_4PV6.pdb
: