Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYLAEK
3GHV Chain:A ((21-90))
----------------------------------------DLPWPPLRNEFRYFKRMTTTSSVEGKQNLVIMGKKTWFSIPEKFRPLKGRINLVLS-RELKEPPQGAHFLS--
General information:
TITO was launched using:
RESULT:
Template:
3GHV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 14410 for 384 contacts (37.5/contact) +
2D Compatibility (PS) -7238 + (NN) -701 + (LL) 4716
1D Compatibility (HY) -2000 + (ID) 850
Total energy: 8337.0 ( 21.71 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_3GHV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GHV-query.scw
PDB file :
Tito_Scwrl_3GHV.pdb
: