Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
1QWZ Chain:A ((46-232))
---------------------------------------------------------AHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKII--
General information:
TITO was launched using:
RESULT:
Template:
1QWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60381 for 1433 contacts (-42.1/contact) +
2D Compatibility (PS) -20009 + (NN) -6903 + (LL) 4392
1D Compatibility (HY) -19600 + (ID) 3650
Total energy: -106151.0 ( -74.08 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1QWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QWZ-query.scw
PDB file :
Tito_Scwrl_1QWZ.pdb
: