Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGTYSVDYTVIQGDSDSASMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGNA----VSVTSKNASSDTRKVSFPVSTLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNTTTPATKSDSSNKVTNPKSSDSSQMFLYGIIFVATGAGLILLKRRAIFK
4H8Q Chain:A ((11-125))
----------------------------LKDGQYDIAFKVLKDKTEEISMMNTYVVSPARLTVKDGKKYIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLFAKLNAKVKVDI--DSMNYHHFYDVQIQFD------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4H8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52664 for 741 contacts (-71.1/contact) +
2D Compatibility (PS) -12295 + (NN) -4614 + (LL) 6352
1D Compatibility (HY) -10800 + (ID) 2200
Total energy: -76221.0 ( -102.86 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_4H8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H8Q-query.scw
PDB file :
Tito_Scwrl_4H8Q.pdb
: