Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVFITTGTEHYLRQLMANYTGGNVTLLQNFSQSLLYQESTGEKLFQEGAEYRVLQSSGSIKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQSTKLTKAMNMNKFLIISFWDSEVFFHDWKKSPLSKEITNIMRKNNTQSGFSHEDIYHYPEFSHDAK
3FJ2 Chain:A ((21-182))
-KKVFITTGTEHYLRQLMENYIGENVTLLQNFSQSLLYQESTGEKLFQEGKEYRVLQSSGSLKGFGIVVFEYIQLRDEEIPIFLQMYQHASLHFSETPGLQSTKLTKAMNTNQFLIVSFWDSEVFFQEWKKTPLHKEITSIMKKNNTQVGFSHEDIYHYPEFS----
General information:
TITO was launched using:
RESULT:
Template:
3FJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58054 for 1196 contacts (-48.5/contact) +
2D Compatibility (PS) -17719 + (NN) -8178 + (LL) 384
1D Compatibility (HY) -23200 + (ID) 7200
Total energy: -113967.0 ( -95.29 by residue)
QMean score : 0.432
(partial model without unconserved sides chains):
PDB file :
Tito_3FJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FJ2-query.scw
PDB file :
Tito_Scwrl_3FJ2.pdb
: