Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTE-AFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQD-KPVNDVVIEKINIK
1XYH Chain:A ((1-154))
--------------MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFIT---------------------------YGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI-
General information:
TITO was launched using:
RESULT:
Template:
1XYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57708 for 1157 contacts (-49.9/contact) +
2D Compatibility (PS) -15929 + (NN) -5600 + (LL) 2860
1D Compatibility (HY) -13200 + (ID) 3950
Total energy: -93527.0 ( -80.84 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1XYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XYH-query.scw
PDB file :
Tito_Scwrl_1XYH.pdb
: