Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
4KN8 Chain:A ((13-266))
MRKYNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQNAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLALPTERGFMPGNGAFTALISHSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKF-
General information:
TITO was launched using:
RESULT:
Template:
4KN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141965 for 2170 contacts (-65.4/contact) +
2D Compatibility (PS) -28313 + (NN) -14436 + (LL) -80
1D Compatibility (HY) -26000 + (ID) 6850
Total energy: -217644.0 ( -100.30 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_4KN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KN8-query.scw
PDB file :
Tito_Scwrl_4KN8.pdb
: